| RefNo | Title |
| KTR/711/5 | Muster certificate: names of 60 footmen, with places of origin, delivered by William Hynde, High Sheriff, Sir John Cutts, Sir John Cotton, Sir John Peyton, and Giles Alington Esq., Commissioners for the Musters in Cambridgeshire to Edmund Funston, gentleman, to be delivered at Rochester. |
| KP114/28/1 | Volume of historical notes and cuttings begun by Rev. R.Y. Whitehead, vicar, and continued by others |
| K588/O/2 | Quietus roll of John Cotton, sheriff of Cambridgeshire and Huntingdonshire. |
| K588/M/16 | Estreat (in English) of court of manor of Coggeshall in Exning for 1586, 1599 ( 2 copies) |
| K588/T/91 | Feoffment of ½ acre meadow in Exning. |
| K588/T/85 | Assignment of 588/T/85: John Cotton, esquire, to John Chennerye of Exning, yeoman. (Highly decorated intials). |
| KAR59/4/1/17 | Miles Sandys, Lord of Manor, v. Freeholders. Award of Martin, Bishop of Ely, Sir John Cotton, Anthony Cage, Mark Steward and Francis Tyndall, arbitrators, in dispute over rights in Willingham fens. |
| KP129/28/23 | Survey of lands in the manor of Over called Penny Lands carried out on behalf of George Sheffield by Sir John Cotton, John Shotbolte, Esq and Thomas Butler, Deputy of Robert Taylor, Esq, surveyor of the County of Cambridge |
| K588/M/15 | Estreat (in English) of court of manor of Coggeshall in Exning for 1586, 1599 ( 2 copies) |
| K588/M/6 | Manor of Coggleshells in Exning (Suffolk): Court Baron |
| KTR/711/3 | Muster certificate: names of 50 footmen, with places of origin, delivered by Sir Henry North, Sir John Peyton, Sir John Cotton, Deputy Lieutenants, to Alerey Yorke, gentleman, to be delivered to the City of Chester. |
| KTR/711/2 | Muster certificate: names of 200 men with places of origin, delivered by Sir Henry North, Sir John Cutts, Sir John Peyton, and Sir John Cotton, Deputy Lieutenants (in the absence of Lord North) to Lord Audley and Sir George Tuchett, to be taken to Chester. |
| K588/M/5 | Manor of Coggleshells in Exning (Suffolk). Court Baron |
| K588/O/10 | Letter from John Cutts, John Peyton and John Cotton to Lord North, treasurer of the king's household and lord lieutenant of Cambridgeshire and Lord St John, lieutenant of Huntingdonshire, furnished by the county for the Earl of Essex and now lying idle in Plymouth. With transcript. (2 items). |
| K588/T/84 | Assignment of term of lease for 21 years. |
| KAR56/5/22 | Sir John Cotton, knight, of Landwade. Revocation of Indenture Tripartite, dated 10 January 1596, relating to: Manor of Cheveley with rights, &c in Cheveley, Ashley, Silverley, Kirtling, 'Uppinge' (i.e. Upend), Newmarket, Ditton Valence, Ditton Camois, Saxton and Wood Ditton; Advowson and patronage of Cheveley Church; All Sir John's properties in Cheveley; Manor of Bansteddes alias Bensteddes in Cheveley; All Sir John's properties in places named in above, purchased of Thomas Stutville. |
| K588/E/3 | Agreement in form of indenture. |
| K588/F/39 | Cole's history of the Cottons of Madingley and Landwade and related families with pen and ink illustrations. |
| K588/E/8 | Copy of writ diem clausit extremum of James I to escheator in Suffolk (11 May 1621) and inquisition post mortem held at Bury St Edmunds (24 May 1621) into lands of John Cotton of Cheveley, knight (as E3, with appurtenances in adjacent parishes), detailing tenure and value and naming John Cotton, aged 5, his heir. |
| K588/O/9 | Copy letter from John Cutts, John Peyton and John Cotton, deputy lieutenants to the justices of the peace and constable of Cambridgeshire and Isle of Ely, for money to pay for militia, with a letter from Lord North, the lord lieutenant of Cambridgeshire, to his deputies concerning sending the militia to France (and transcript). (cf 'John Layer of Shepreth'). (2 items). |
| K588/T/87 | Feoffment of 1½r arable in Arnould feilde, Exning. |
| K588/T/89 | Bargain and sale of 3 acres in Fordham Field. |
| K588/M/32 | Terrier of 588/245A in Burwell, Exning and Newmarket (Suffolk) |
| K588/T/86 | Bargain and Sale of 3r meadow in Landwade Moore, Exning, 2 half-acre pieces of arable in Arnowlde filde. Thomas Pleasance of Exning, yeoman, to Sir John Cotton of Landwade, knight, and John Cotton, esquire, his son and heir. |
| K588/T/90 | Lease for eight years. |
| K588/M/8 | Manor of Exning (alias Exning Hall): Court Baron |
| K588/T/119 | Covenant to procure marriage of John Cotton esquire and Elizabeth, covenantee's daughter. |
| KP42/1/1 | Composite register |